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\name{plotTracks.CBS}
\alias{plotTracks.CBS}
\alias{CBS.plotTracks}
\alias{plotTracks,CBS-method}

\title{Plots copy numbers along the genome}

\description{
 Plots copy numbers along the genome for one or more chromosomes.
 Each type of track is plotted in its own panel.
}

\usage{
\method{plotTracks}{CBS}(x, scatter=TRUE, pch=20, col="gray", meanCol="purple", cex=1, grid=FALSE,
  Clim="auto", xScale=1e-06, Clab="auto", ..., byIndex=FALSE, mar=NULL, add=FALSE)
}

\arguments{
  \item{x}{A result object returned by \code{\link{segmentByCBS}}().}
  \item{pch}{The type of points to use.}
  \item{Clim}{The range of copy numbers.}
  \item{xScale}{The scale factor used for genomic positions.}
  \item{...}{Not used.}
  \item{add}{If \code{\link[base:logical]{TRUE}}, the panels plotted are added to the existing plot,
    otherwise a new plot is created.}
}

\value{
  Returns nothing.
}

\author{Henrik Bengtsson}



\keyword{internal}
\keyword{methods}
\keyword{IO}
