
@article{price2010fasttree,
  title={FastTree 2--approximately maximum-likelihood trees for large alignments},
  author={Price, Morgan N and Dehal, Paramvir S and Arkin, Adam P},
  journal={PloS one},
  volume={5},
  number={3},
  pages={e9490},
  year={2010},
  publisher={Public Library of Science},
  doi={10.1371/journal.pone.0009490}
}

@article{Stamatakis2014raxml,
    author = {Stamatakis, Alexandros},
    title = {RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies},
    journal = {Bioinformatics},
    volume = {30},
    number = {9},
    pages = {1312-1313},
    year = {2014},
    doi = {10.1093/bioinformatics/btu033},
    URL = {http://dx.doi.org/10.1093/bioinformatics/btu033},
}

@article{Stamatakis2008raxml,
    author = {Stamatakis, Alexandros and Hoover, Paul and Rougemont, Jacques},
    title = {A Rapid Bootstrap Algorithm for the RAxML Web Servers},
    journal = {Systematic Biology},
    volume = {57},
    number = {5},
    pages = {758-771},
    year = {2008},
    doi = {10.1080/10635150802429642},
    URL = {http://dx.doi.org/10.1080/10635150802429642},
}

@article{Minh2020iqtree,
  title = {IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era},
  author = {Minh, Bui Quang and Schmidt, Heiko A and Chernomor, Olga and Schrempf, Dominik and Woodhams, Michael D and von Haeseler, Arndt and Lanfear, Robert},
  journal = {Molecular Biology and Evolution},
  volume =  {37},
  number =  {5},
  pages = {1530-1534},
  year =  {2020},
  doi = {10.1093/molbev/msaa015},
  URL = {http://dx.doi.org/10.1093/molbev/msaa015},
}

@article{Kalyaanamoorthy2017modelfinder,
    author = {Kalyaanamoorthy, Subha and Minh, Bui Quang and Wong, Thomas K F and von Haeseler, Arndt and Jermiin, Lars S},
    title = {ModelFinder: fast model selection for accurate phylogenetic estimates},
    journal = {Nature Methods},
    year = {2017},
    volume = {14},
    number = {6},
    pages = {587-589},
    doi = {10.1038/nmeth.4285},
    URL = {http://dx.doi.org/10.1038/nmeth.4285},
}

@article{Minh2013ultrafastbootstrap,
    author = {Minh, Bui Quang and Nguyen, Minh Anh Thi and von Haeseler, Arndt},
    title = {Ultrafast Approximation for Phylogenetic Bootstrap},
    journal = {Molecular Biology and Evolution},
    volume = {30},
    number = {5},
    pages = {1188-1195},
    year = {2013},
    doi = {10.1093/molbev/mst024},
    URL = {http://doi.org/10.1093/molbev/mst024},
}

@article{Hoang2017ultrafastbootstrap2,
    author = {Hoang, Diep Thi and Chernomor, Olga and von Haeseler, Arndt and Minh, Bui Quang and Vinh, Le Sy},
    title = {UFBoot2: Improving the Ultrafast Bootstrap Approximation},
    journal = {Molecular Biology and Evolution},
    year = {2017},
    volume = {35},
    number = {2},
    pages = {518-522},
    doi = {10.1093/molbev/msx281},
}

@article{robinson1981comparison,
  title={Comparison of phylogenetic trees},
  author={Robinson, David F and Foulds, Leslie R},
  journal={Mathematical biosciences},
  volume={53},
  number={1-2},
  pages={131--147},
  year={1981},
  publisher={Elsevier}
}
