/*===========================================================================
*
*                            PUBLIC DOMAIN NOTICE
*               National Center for Biotechnology Information
*
*  This software/database is a "United States Government Work" under the
*  terms of the United States Copyright Act.  It was written as part of
*  the author's official duties as a United States Government employee and
*  thus cannot be copyrighted.  This software/database is freely available
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*
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*  may be obtained by using this software or data. The NLM and the U.S.
*  Government disclaim all warranties, express or implied, including
*  warranties of performance, merchantability or fitness for any particular
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*  Please cite the author in any work or product based on this material.
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* ===========================================================================
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*/

#include "jni_PileupIteratorItf.h"
#include "jni_ErrorMsg.hpp"
#include "jni_String.hpp"

#include <ngs/itf/PileupItf.hpp>

using namespace ngs;

static
PileupItf * Self ( size_t jself )
{
    if ( jself == 0 )
        throw ErrorMsg ( "NULL self parameter" );

    return ( PileupItf* ) jself;
}

/*
 * Class:     ngs_itf_PileupIteratorItf
 * Method:    NextPileup
 * Signature: (J)Z
 */
JNIEXPORT jboolean JNICALL Java_ngs_itf_PileupIteratorItf_NextPileup
    ( JNIEnv * jenv, jobject jthis, jlong jself )
{
    try
    {
        return ( jboolean ) Self ( jself ) -> nextPileup ();
    }
    catch ( ErrorMsg & x )
    {
        ErrorMsgThrow ( jenv, xt_error_msg, x . what () );
    }
    catch ( std :: exception & x )
    {
        ErrorMsgThrow ( jenv, xt_runtime, x . what () );
    }
    catch ( ... )
    {
        JNI_INTERNAL_ERROR ( jenv, "%s", __func__ );
    }

    return false;
}
