.. MacSyFinder - Detection of macromolecular systems in protein datasets
    using systems modelling and similarity search.
    Authors: Sophie Abby, Bertrand Néron
    Copyright © 2014-2025  Institut Pasteur (Paris), and CNRS.
    See the COPYRIGHT file for details
    MacSyFinder is distributed under the terms of the GNU General Public License (GPLv3).
    See the COPYING file for details.

.. _scripts:

*******
scripts
*******

The are 4 entry points.

    * macsyfinder: which is the main script
    * macsydata: which allow to manage the models (command name msf_data)
    * macsyconfig: an interactive conversational utility to generate macsyfinder configuration file (command name msf_config)
    * macsyprofile: an utility dedicated to modelers which gather information about hmmer output (command name msf_profile)

.. _scripts_api:

API reference
=============

macsyfinder
===========
.. automodule:: macsyfinder.scripts.msf
   :members:
   :private-members:
   :special-members:

macsydata
=========
.. automodule:: macsyfinder.scripts.macsydata
   :members:
   :private-members:
   :special-members:

macsyconfig
===========
.. automodule:: macsyfinder.scripts.macsyconfig
   :members:
   :private-members:
   :special-members:

macsyprofile
============
.. automodule:: macsyfinder.scripts.macsyprofile
   :members:
   :private-members:
   :special-members:
