# macsyfinder 20220317.dev
# models : functional-0.0b2
# /home/bneron/Projects/GEM/MacSyFinder/MacSyFinder/py39/bin/macsyfinder --sequence-db tests/data/base/test_14.fasta --db-type ordered_replicon --models-dir tests/data/models/ --models functional C_multi_model D_multi_model --replicon-topology circular -w 4 -o functional_test_ordered_multi_model --relative-path
# Systems found:

system id = test_14_C_multi_model_1
model = functional/C_multi_model
replicon = test_14
clusters = [('VICH001.B.00001.C001_01506', 'T1SS_omf', 8), ('VICH001.B.00001.C001_01398', 'T1SS_mfp', 9), ('VICH001.B.00001.C001_01399', 'T1SS_abc', 10), ('VICH001.B.00001.C001_01400', 'T2SS_gspD', 11)]
occ = 1
wholeness = 1.000
loci nb = 1
score = 2.500

mandatory genes:
	- T1SS_omf: 1 (T1SS_omf)

accessory genes:
	- T1SS_mfp: 1 (T1SS_mfp)
	- T1SS_abc: 1 (T1SS_abc)
	- T2SS_gspD: 1 (T2SS_gspD [test_14_D_multi_model_2])

neutral genes:

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system id = test_14_D_multi_model_2
model = functional/D_multi_model
replicon = test_14
clusters = [('VICH001.B.00001.C001_01400', 'T2SS_gspD', 11), ('GCF_000005845_000980', 'T4P_pilB', 12), ('GCF_000005845_025680', 'T4P_pilW', 13)]
occ = 1
wholeness = 1.000
loci nb = 1
score = 2.000

mandatory genes:
	- T4P_pilB: 1 (T4P_pilB)

accessory genes:
	- T4P_pilW: 1 (T4P_pilW)
	- T2SS_gspD: 1 (T2SS_gspD [test_14_C_multi_model_1])

neutral genes:

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