GT-READJOINER-PREF(1)

NAME
gt-readjoiner-prefilter - Remove contained and low-quality reads and encode read set in GtEncseq format.

SYNOPSIS

gt readjoiner prefilter [option ...]

OPTIONS

-readset
    specify the readset name (default: filename of first input sequence_file)

-db
    specify a list of input libraries (Fasta/FastQ); for single-end libraries use the filename (which is not allowed to contain : symbols); for paired-end libraries with reads interleaved (f,r,f,r,...) in a single file use the notation <filename>:<insertlength>[,<stdev>] (stdev may be omitted); for paired-end with reads in two files (f, r) use the notation <file_f>:<file_r>:<insertlength>[,<stdev>]

-v
    be verbose (default: no)

-q
    suppress standard output messages (default: no)

-help
    display help for basic options and exit

-help+
    display help for all options and exit

-version
    display version information and exit

AUTHOR

Report bugs to <gt-users@genometools.org>.