GT-COMPREADS-REFDE(1)

NAME
gt-compreads-refdecompress - Decodes a given RCR (Reference Compressed Reads).

SYNOPSIS

gt compreads refdecompress [option ...] (-file file)

OPTIONS

-v
    be verbose (default: no)

-qnames
    decode read names, default is to just number them (default: no)

-ref
    Index file (generated by the gt encseq tool) for reference genome. (default: undefined)

-rcr
    specify base name of file containing RCR. (default: undefined)

-name
    specify base name for decoded RCR (suffix will be ".rcr.decoded") (default: undefined)

-help
    display help and exit

-version
    display version information and exit

AUTHOR

Report bugs to <gt-users@genometools.org>.