GT-ORFFINDER(1)

NAME
gt-orffinder - Identifies ORFs (open reading frames) in sequences.

SYNOPSIS

gt orffinder [option ...] indexname [GFF3_file ...]

OPTIONS

-types
    Specify regions which should be searched for open reading frames, e.g. LTR_retrotransposon

-allorfs
    search for all ORFs instead of only the longest (default: no)

-min
    minimum length of ORF (default: 30)

-max
    maximum length of ORF (default: 10000)

-v
    be verbose (default: no)

-o
    redirect output to specified file (default: undefined)

-gzip
    write gzip compressed output file (default: no)

-bzip2
    write bzip2 compressed output file (default: no)

-force
    force writing to output file (default: no)

-help
    display help and exit

-version
    display version information and exit

AUTHOR

Report bugs to <gt-users@genometools.org>.