GT-SEQ(1)

NAME
gt-seq - Parse the given sequence file(s) and construct the corresponding index files.

SYNOPSIS

gt seq [option ...] sequence_file [...]

OPTIONS

-recreate
    recreate index files, even if they exist already (default: no)

-showfasta
    show all sequences (in FASTA format) (default: no)

-showseqnum
    show sequence with given number (in FASTA format) (default: undefined)

-gc-content
    print GC-content (for DNA files) (default: no)

-stat
    show sequence statistics (default: no)

-seqlengthdistri
    show sequence length distribution (default: no)

-width
    set output width for FASTA sequence printing (0 disables formatting) (default: 0)

-o
    redirect output to specified file (default: undefined)

-gzip
    write gzip compressed output file (default: no)

-bzip2
    write bzip2 compressed output file (default: no)

-force
    force writing to output file (default: no)

-help
    display help and exit

-version
    display version information and exit

AUTHOR

Report bugs to <gt-users@genometools.org>.