GT-SIMREADS(1)

NAME
gt-simreads - Simulate sequencing reads from random positions in the input sequence(s).

SYNOPSIS

gt simreads [option ...] <encseq>

OPTIONS

-num
    desired number of reads (default: undefined)

-coverage
    desired coverage of the reads (default: undefined)

-len
    fixed read length (default: undefined)

-minlen
    minimal read length (default: undefined)

-maxlen
    maximal read length (default: undefined)

-distlen
    use read length distribution file (in the output format of the seqstat tool) (default: undefined)

-o
    redirect output to specified file (default: undefined)

-gzip
    write gzip compressed output file (default: no)

-bzip2
    write bzip2 compressed output file (default: no)

-force
    force writing to output file (default: no)

-p
    show a progress bar (default: no)

-v
    be verbose (default: no)

-ss
    simulate reads in forward direction only (default: no)

-help
    display help for basic options and exit

-help+
    display help for all options and exit

-version
    display version information and exit

AUTHOR

Report bugs to <gonnella@zbh.uni-hamburg.de>.