GT-LTRCLUSTERING(1)

NAME
gt-ltrclustering - Cluster features of LTRs.

SYNOPSIS

gt ltrclustering [option ...] indexname [GFF3_file ...]

OPTIONS

-psmall
    specify how many percent of the smaller sequence a match needs to cover in order to cluster the two sequences of the match. (default: 0)

-plarge
    specify how many percent of the larger sequence a match needs to cover in order to cluster the two sequences of the match. (default: 0)

-o
    redirect output to specified file (default: undefined)

-gzip
    write gzip compressed output file (default: no)

-bzip2
    write bzip2 compressed output file (default: no)

-force
    force writing to output file (default: no)

-help
    display help and exit

-version
    display version information and exit

AUTHOR

Report bugs to <gt-users@genometools.org>.