GT-ENCSEQ-ENCODE(1)

NAME
gt-encseq-encode - Encode sequence files efficiently.

SYNOPSIS

gt encseq encode sequence_file [sequence_file [sequence_file ...]]

OPTIONS

-showstats
    show compression results (default: no)

-ssp
    output sequence separator positions to file (default: yes)

-des
    output sequence descriptions to file (default: yes)

-sds
    output sequence description separator positions to file (default: yes)

-md5
    output MD5 sums to file (default: yes)

-sat
    specify kind of sequence representation by one of the keywords direct, bytecompress, eqlen, bit, uchar, ushort, uint32 (default: undefined)

-dna
    input is DNA sequence (default: no)

-protein
    input is protein sequence (default: no)

-indexname
    specify name for index to be generated (default: undefined)

-smap
    specify file containing a symbol mapping (default: undefined)

-lossless
    allow lossless original sequence retrieval (default: no)

-v
    be verbose (default: no)

-help
    display help for basic options and exit

-help+
    display help for all options and exit

-version
    display version information and exit

AUTHOR

Report bugs to <gt-users@genometools.org>.