OBConformerData Class Reference

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Public Member Functions | Protected Attributes
OBConformerData Class Reference

`#include <openbabel/generic.h>`

Inheritance diagram for OBConformerData:
[legend]

List of all members.

## Public Member Functions
| OBConformerData ()
| OBConformerData (const OBConformerData &)
virtual OBGenericData * | Clone (OBBase *) const
| ~OBConformerData ()
OBConformerData & | operator= (const OBConformerData &)
void | SetDimension (std::vector< unsigned short > vd)
void | SetEnergies (std::vector< double > ve)
void | SetForces (std::vector< std::vector< vector3 > > vf)
void | SetVelocities (std::vector< std::vector< vector3 > > vv)
void | SetDisplacements (std::vector< std::vector< vector3 > > vd)
void | SetData (std::vector< std::string > vdat)
std::vector< unsigned short > | GetDimension ()
std::vector< double > | GetEnergies ()
std::vector< std::vector < vector3 > > | GetForces ()
std::vector< std::vector < vector3 > > | GetVelocities ()
std::vector< std::vector < vector3 > > | GetDisplacements ()
std::vector< std::string > | GetData ()
void | SetAttribute (const std::string &v)
void | SetOrigin (const DataOrigin s)
virtual const std::string & | GetAttribute () const
unsigned int | GetDataType () const
virtual const std::string & | GetValue () const
virtual DataOrigin | GetOrigin () const
## Protected Attributes
std::vector< unsigned short > | _vDimension
std::vector< double > | _vEnergies
std::vector< std::vector < vector3 > > | _vForces
std::vector< std::vector < vector3 > > | _vVelocity
std::vector< std::vector < vector3 > > | _vDisplace
std::vector< std::string > | _vData
std::string | _attr
unsigned int | _type
DataOrigin | _source

## Detailed Description

Used to hold data on conformers or geometry optimization steps.

Supplements the support for multiple coordinate sets in OBMol, e.g., OBMol::GetConformer()

## Constructor & Destructor Documentation

OBConformerData | ( |  | ) |

OBConformerData | ( | const OBConformerData & | src | ) |

~OBConformerData | ( |  | ) | `[inline]`

## Member Function Documentation

virtual OBGenericData* Clone | ( | OBBase * |  | ) | const`[inline, virtual]`

Reimplemented from OBGenericData.

OBConformerData & operator= | ( | const OBConformerData & | src | ) |

void SetDimension | ( | std::vector< unsigned short > | vd | ) | `[inline]`

void SetEnergies | ( | std::vector< double > | ve | ) | `[inline]`

Referenced by OBForceField::GetConformers(), OBForceField::GetCoordinates(), and OBMol::SetEnergies().

void SetForces | ( | std::vector< std::vector< vector3 > > | vf | ) | `[inline]`

Referenced by OBForceField::GetCoordinates().

void SetVelocities | ( | std::vector< std::vector< vector3 > > | vv | ) | `[inline]`

void SetDisplacements | ( | std::vector< std::vector< vector3 > > | vd | ) | `[inline]`

void SetData | ( | std::vector< std::string > | vdat | ) | `[inline]`

std::vector<unsigned short> GetDimension | ( |  | ) | `[inline]`

std::vector<double> GetEnergies | ( |  | ) | `[inline]`

Referenced by OBMol::GetEnergies(), and OBMol::GetEnergy().

std::vector< std::vector< vector3 > > GetForces | ( |  | ) | `[inline]`

std::vector< std::vector< vector3 > > GetVelocities | ( |  | ) | `[inline]`

std::vector< std::vector< vector3 > > GetDisplacements | ( |  | ) | `[inline]`

std::vector<std::string> GetData | ( |  | ) | `[inline]`

void SetAttribute | ( | const std::string & | v | ) | `[inline, inherited]`

Set the attribute (key), which can be used to retrieve this data.

Referenced by OBGastChrg::AssignPartialCharges(), OBMol::DoTransformations(), OBMol::FindLSSR(), OBMol::FindSSSR(), OBForceField::GetAtomTypes(), OBMol::GetFormula(), OBMol::GetLSSR(), OBForceField::GetPartialCharges(), OBMol::GetSSSR(), OBDescriptor::PredictAndSave(), and OBMol::SetFormula().

void SetOrigin | ( | const DataOrigin | s | ) | `[inline, inherited]`

Set the origin of this data, which can be used to filter the data.

Referenced by OBGastChrg::AssignPartialCharges(), OpenBabel::CalcSignedVolume(), OBMol::DoTransformations(), OBMol::FindAngles(), OBMol::FindLSSR(), OBMol::FindSSSR(), OBMol::FindTorsions(), OBMol::GetFormula(), OBMol::GetLSSR(), OBMol::GetSSSR(), OBDescriptor::PredictAndSave(), and OBMol::SetFormula().

virtual const std::string& GetAttribute | ( |  | ) | const`[inline, virtual, inherited]`

Returns:
  The attribute (key), which can be used to retrieve this data

Referenced by OBMoleculeFormat::MakeCombinedMolecule().

unsigned int GetDataType | ( |  | ) | const`[inline, inherited]`

Returns:
  the data type for this object as defined in OBGenericDataType

virtual const std::string& GetValue | ( |  | ) | const`[inline, virtual, inherited]`

Base class returns a default value (the attribute type) but should never be called.

Reimplemented in OBPairData, and OBCommentData.

Referenced by OBDepict::DrawMolecule(), OBDescriptor::FilterCompare(), and OBDescriptor::GetValues().

virtual DataOrigin GetOrigin | ( |  | ) | const`[inline, virtual, inherited]`

## Member Data Documentation

std::vector<unsigned short> _vDimension`[protected]`

Dimensionalities of conformers.

Referenced by OBConformerData::operator=().

std::vector<double> _vEnergies`[protected]`

Relative energies of conformers (preferably in kJ/mol)

Referenced by OBConformerData::operator=().

std::vector< std::vector< vector3 > > _vForces`[protected]`

Atomic forces for each conformer.

Referenced by OBConformerData::operator=().

std::vector< std::vector< vector3 > > _vVelocity`[protected]`

Atomic velocities for each conformer (e.g., trajectories)

Referenced by OBConformerData::operator=().

std::vector< std::vector< vector3 > > _vDisplace`[protected]`

Atomic displacements for each conformer (e.g., RMS distances)

Referenced by OBConformerData::operator=().

std::vector<std::string> _vData`[protected]`

Additional data (as strings)

Referenced by OBConformerData::operator=().

std::string _attr`[protected, inherited]`

attribute tag (e.g., "UnitCell", "Comment" or "Author")

Referenced by OBRotamerList::Clone(), and OBNasaThermoData::OBNasaThermoData().

unsigned int _type`[protected, inherited]`

attribute type -- declared for each subclass

Referenced by OBRotamerList::Clone(), and OBNasaThermoData::OBNasaThermoData().

DataOrigin _source`[protected, inherited]`

source of data for accounting

Referenced by OBConformerData::operator=(), OBSymmetryData::operator=(), OBTorsionData::operator=(), OBAngleData::operator=(), and OBChiralData::operator=().

The documentation for this class was generated from the following files:

- generic.h
- generic.cpp

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