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### - a -

- Add() : OBAtomClassData , FastSearchIndexer
- AddAgent() : OBReaction
- AddAngleConstraint() : OBFFConstraints
- AddAtom() : OBMol , OBQuery , OBResidue
- AddAtomConstraint() : OBFFConstraints
- AddAtomLabels() : OBDepict
- AddAtomRef() : OBChiralData
- AddAtomXConstraint() : OBFFConstraints
- AddAtomYConstraint() : OBFFConstraints
- AddAtomZConstraint() : OBFFConstraints
- AddBond() : OBMol , OBQuery , OBAtom , OBMol
- AddChemObject() : OBConversion
- AddConformer() : OBMol
- AddData() : OBSetData
- AddDistanceConstraint() : OBFFConstraints
- AddGradient() : OBForceField
- AddHydrogens() : OBMol
- AddIgnore() : OBFFConstraints
- AddInterGroup() : OBForceField
- AddInterGroups() : OBForceField
- AddIntraGroup() : OBForceField
- AddNbrs() : OBBuilder
- AddOption() : OBConversion
- AddPolarHydrogens() : OBMol
- AddProduct() : OBReaction
- AddProperties() : OBDescriptor
- AddReactant() : OBReaction
- AddResidue() : OBAtom , OBMol
- AddRingFromClosure() : OBRingSearch
- AddRotamer() : OBRotamerList
- AddRotamers() : OBRotamerList
- AddRotor() : OBRotorKeys
- AddTorsion() : OBTorsion
- AddTorsionConstraint() : OBFFConstraints
- AddTransform() : SpaceGroup
- AliasData() : AliasData
- Align() : OBAlign , OBMol
- Apply() : OBChemTsfm
- AsArray() : vector3
- assign_rules() : patty
- assign_types() : patty
- AssignAromaticFlags() : OBAromaticTyper
- AssignBonds() : OBResidueData
- AssignFunctionalGroupBonds() : OBBondTyper
- AssignHyb() : OBAtomTyper
- AssignImplicitValence() : OBAtomTyper
- AssignPartialCharges() : OBGastChrg
- AssignSeedPartialCharge() : OBPhModel
- AssignSpinMultiplicity() : OBMol
- AssignTorVals() : OBRotorList
- AssignTypes() : OBRingTyper , OBAtomTyper
- AutomaticFormalCharge() : OBMol
- AutomaticPartialCharge() : OBMol
- AverageBondAngle() : OBAtom

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