Overview (SnpEff 5.4 API)

Packages

Package

Description

org.snpeff.align

org.snpeff.binseq

org.snpeff.binseq.coder

org.snpeff.binseq.comparator

org.snpeff.binseq.indexer

org.snpeff.codons

org.snpeff.collections

org.snpeff.complexity

org.snpeff.coverage

org.snpeff.fastq

org.snpeff.fileIterator

org.snpeff.fileIterator.microCosm

org.snpeff.fileIterator.parser

org.snpeff.filter

org.snpeff.genBank

org.snpeff.geneOntology

org.snpeff.geneSets

org.snpeff.geneSets.algorithm

org.snpeff.genotypes

org.snpeff.gtex

org.snpeff.interval

org.snpeff.interval.codonChange

org.snpeff.interval.tree

org.snpeff.logStatsServer

org.snpeff.motif

org.snpeff.nextProt

org.snpeff.nmer

org.snpeff.osCmd

org.snpeff.outputFormatter

org.snpeff.overlap

org.snpeff.probablility

org.snpeff.probablility.bootstrap

org.snpeff.reactome

org.snpeff.reactome.events

org.snpeff.serializer

org.snpeff.snpEffect

org.snpeff.snpEffect.commandLine

org.snpeff.snpEffect.factory

org.snpeff.spliceSites

org.snpeff.stats

org.snpeff.stats.plot

org.snpeff.util