To cite CNVkit in publications, please use:

  Talevich, E., Shain, A. H., Botton, T., & Bastian, B. C. (2014).
  CNVkit: Genome-wide copy number detection and visualization from
  targeted sequencing. PLOS Computational Biology 12(4): e1004873.
  doi: 10.1371/journal.pcbi.1004873

A BibTeX entry for LaTeX users is:

@article{,
  title = {{CNVkit: Genome-wide copy number detection and visualization from targeted sequencing}},
  author = {Talevich, Eric and Shain, A. Hunter and Botton, Thomas and Bastian, Boris C.},
  journal = {PLOS Computational Biology},
  month = apr,
  year = {2016}
  doi = {10.1371/journal.pcbi.1004873},
  url = {http://dx.doi.org/10.1371/journal.pcbi.1004873},
}

