HPC::Runner::Command::Plugin::Logger::Sqlite;

    Base class for
    HPC::Runner::Command::submit_jobs::Plugin::Logger::Sqlite and
    HPC::Runner::Command::execute_job::Plugin::Sqlite

 Attributes

  schema

    Sqlite3 Schema Object

  db_file

    Path to sqlite3 db file. If the file doesn't exist sqlite3 will create
    it.

  submission_id

    This is the ID for the entire hpcrunner.pl submit_jobs submission, not
    the individual scheduler IDs

 Subroutines

NAME

    HPC::Runner::Command::Plugin::Sqlite - Log HPC::Runner workflows to a
    sqlite DB.

SYNOPSIS

    To submit jobs to a cluster

        hpcrunner.pl submit_jobs --hpc_plugins Logger::Sqlite

    To execute jobs on a single node

        hpcrunner.pl execute_jobs --job_plugins Logger::Sqlite

    Generate a summary report

      hpcrunner.pl stats
      hpcrunner.pl stats --jobname gatk
      hpcrunner.pl stats --project Sequencing1
      hpcrunner.pl stats --project Sequencing1 --jobname gatk_haplotypecaller

    Generate a longer report

      hpcrunner.pl stats
      hpcrunner.pl stats --long/-l --jobname gatk
      hpcrunner.pl stats --long/-l --project Sequencing1
      hpcrunner.pl stats --long/-l --project Sequencing1 --jobname gatk_haplotypecaller

DESCRIPTION

    HPC::Runner::Command::Plugin::Sqlite - Log HPC::Runner workflows to a
    sqlite DB.

    This plugin requires sqlite3 in the path.

AUTHOR

    Jillian Rowe <jillian.e.rowe@gmail.com>

COPYRIGHT

    Copyright 2016- Jillian Rowe

LICENSE

    This library is free software; you can redistribute it and/or modify it
    under the same terms as Perl itself.

SEE ALSO

